Bioinf

Hybrid Metaheuristics and Matheuristics for Problems in Bioinformatics and Transportation

Sandro Pirkwieser

Exact Methods and Metaheuristic Approaches for Deriving High Quality Fully Resolved Consensus Trees

Sandro Pirkwieser, Ruben Ruiz-Torrubiano, Günther Raidl

Finding Consensus Trees by Evolutionary, Variable Neighborhood Search, and Hybrid Algorithms

Sandro Pirkwieser, Günther Raidl

Algorithmic Approaches to the String Barcoding Problem

Improved Protein Identification After Fast Elimination of Non-Interpretable Peptide MS/MS Spectra and Noise Reduction

Nedim Mujezinovic

CyMATE: A New Tool for Methylation Analysis of Plant Genomic DNA after Bisulfite Sequencing

Jennifer Hetzl, Andrea M. Foerster, Günther Raidl, Ortrun Mittelsten Scheid

Cleaning of Raw Peptide MS/MS Spectra: Improved Protein Identification Following Deconvolution of Multiply Charged Peaks, Isotope Clusters, and Removal of Background Noise

Nedim Mujezinovic, Günther Raidl, James R. A. Hutchins, Jan-Michael Peters, Karl Mechtler, Frank Eisenhaber

Multiple Structural RNA Alignment with Affine Gap Costs Based on Lagrangian Relaxation

Veronika Gamper

An Alignment Graph based Evolutionary Algorithm for the Multiple Sequence Alignment Problem

An Evolutionary Algorithm for the Maximum Weight Trace Formulation of the Multiple Sequence Alignment Problem

Gabriele Koller, Günther Raidl